Quick Question, why did you change the Toolkit to force you to use SuperSU?
I have had nothing but trouble from it. Firstly, it didn't root (stock rom, 4.1.2). However SuperSU did install fine. It wants to update the binaries (whatever that is!), but fails on this.
Still, months later I am without root and have a useless app. Updated it using the Market, but binaries still wouldn't update, still no root.
Didn't have any problem with the other permissions app. I also can't update to 4.2.2 as it fails during installation. Again, never did this when the other app was used :/
Now I can't even un-install SuperSU using the app itself. Don't get me wrong, looks like a great app but if it doesn't even work from the go then I loose interest pretty quickly
Don't get me wrong, the Toolkit is a fantastic piece of work and saves so much complication when wanting to simply root a phone, just a shame it's become useless at the mo