Default Kitkat download failure

I posted in the noob thread with no response. .I've searched xda and the net via google.
My issue is non logical and selective programs that will not allow down loading to the internal storage. .yes I saw the long list of not downloading to the sd card, but mine is internal memory. The external sd works fine.
I was running bone stock 4.4.2 for a week no issues. I rooted via cf autoroot and lost ability to save files from any program I found ..zedge..swift key language pack..chrome etc.
Last night did a full wipe and factory reset in twrp. Then restored from backup the stock nae found here
http://forum.xda-developers.com/show...php?p=50668765
And still have same issues except this time Internet Explorer is allowing image downloads to the internal memory?? Other programs are still the same.
Thanks
EDIT
Update - Found TWRP has an issue that causes loss write abiltity to internal storage with some roms after you do a restore...read about in in the Sacs Thread

Sent from my SPH-L720 using Tapatalk
Sprint S3