Do a data reset from dialer ##72786# and when it loads (you may have to wait a few seconds) select reset from upper right corner. You may need to switch to CDMA Only to get it to work--I did. This solved the problem for me. I was having almost identical SIM card problems after running the RUU.
Device: HTC EVO 4G LTE | ROM: Viper4G 4.0.0
S-Off (LazyPanda)
Hboot: 2.10.0000 | Kernel: 3.4.10-gdd05a11
Baseband (Radio):
Build: 2.12.401.1 | PRI: 3.02_003 | PRL: 25018 | Recovery: TWRP
Nova Launcher Prime