Default Phone will not shut off all the way

Had my phone for a couple days and decided to root, safestrap, and flash alliance rom. Everything works great when the phone is running but I am running into an issue when I need to reboot or shut the phone down. If I use the power menu to shut down or reboot the phone screen will turn black like normal. The notification light and recent/back buttons light up like they normally do when the phone is shutting down but it just stays like that, no vibrate no sounds, Ive let it sit for 5+ min and it still stays like this. Any help would be appreciated.