I have the full body skin - my tablet and dock are both covered front and back (but not the sides) with the clear skin.
I'm not sure where you mean that the cut outs on the skin don't miss the dock. The long curved like pieces at both sides of the bottom of the tablet? Mine seem fine. The tablet doesn't "hesitate" going in and it snaps in place just like before. I was gentle with it the first few times for fear of screwing up the skins if I didn't have it lined up right, but once I saw it seemed ok, I just went back after it with less worry now that I wont be scratching it by putting it on and off the dock!
I did however fail to pick up on the fact that it wasn't a real good idea to clam shell close the two of them together in the beginning - not real pretty trying to pull the two apart