The best way to get back to stock is to go to my HD/HD+ CWM thread linked in my signature and make a new bootable CWM SD per item 1a there and use that to flash the plain stock 2.2.0 zip from item 6. Follow that with a factory reset with CWM. That should make it completely stock.
Sent from my BN NookHD+ using XDA Premium HD app
See my Nook Color Tips Thread here
and my Nook Color EMMC Partition Repair Thread here
and my Nook Color Updated CM SD Installation Instructions here
and my Nook HD/HD+ stock tips thread here
and my Nook HD/HD+ CWM Root Tools thread here
e.mote's Nook HD/HD+ Dummies Guide for installing CM10.1/CM10.2/CM11 here