Default [Q] deodexed framework.jar with odexed rom??

I just want to deodex the framework.odex to a full framework.jar file on my stock Samsung rom. Not my entire rom.

If I I only deodex the framework file without deodexing the entire rom, will my phone still work like this??

I am not worried about what happens to the /system folder as I can re-flash it w/ Odin but this is a pain in the a** as I will need to root and make all my root based changes all over again.

Can someone please help me with this?? I have spend hours trying to convert my framework.odex to a framework.jar and every single method and tool that I have found online has given some kind of error every time. I do not want to spend any more time on this unless I know it will even work with the device.