I was able to get them removed but it took a bit of work in the terminal. (I'm running GingerBread, Rooted) I deleted the files permanently.
Start up the terminal emulator and then type the following:
su (Accept superuser permissions if you haven't before)
cd /system/app
ls (This will display all the files in the directory)
mount -o remount,rw /system
rm /system/app/Phone.apk
You'll start getting force closes. Reboot the system now.
su
cd /system/app
ls (This will display all the files in the directory, This is optional)
mount -o remount,rw /system
rm /system/app/TelePhonyProvider.apk
Reboot the system. You should be good to go.
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