Default Rooted but quick boot and rom manager not working SOLVED

I am rooted. I have used Quick boot on a number of tablets. Both Quick Boot and Rom Manager''s options to reboot, or reboot into recovery do not work. Nothing happens as if not rooted. I can get into recovery using the buttons or by abd reboot recovery. Any ideas on what could be causing this? Thanks

Update Solved:

Had to once again install Supersu even though I had root access.
Phone - Galaxy S3 - stock

Galaxy Note 10.1 (2014) (rooted) Running Scott's Clean Rom

Nexus 10 rooted running Craig Gomez's ThunderKat (4.4.2) with Franco kernel