So after some tinkering I got my card working. I have the same set up as Chillout. So I put the card in my wife's N3 and it read the card properly. So I decided to Oden back the stock firmware and the PIT reparations found here http://forum.xda-developers.com/show....php?t=2576104
. When I was done the card still wouldn't read. So, I decided to flash the stock firmware us in Kies. When it finished, the card read just fine. Next I rooted again with Kingo and all is well. I'm not saying that this is the answer, but I feel that somehow my partitions got fouled up. I have had this type of issues on other devices and found that a factory restore, while it is a bother, seems to work in a pinch for getting a clean slate. See the screen of my card using link2sd.
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In Love with my Rooted Galaxy Note 3!