Check the post I made in that thread. Go into TWRP and do a FULL userdata format. (You can "fastboot boot" TWRP without flashing it if you wish, or you can flash it.)
(the standard factory reset will just remove all files outside of /data/media without reformatting the partition.)
Based on your description of what you did to flash it, I'm fairly certain that your partition table is OK (since it doesn't look like you altered that), but you flashed a premade 16GB userdata image to a 64GB partition.
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