If you flash a custom recovery, Knox will trip next time you boot. If you flash anything non official, same thing.
With this method you flash only official, though old, firmware parts.
No worries, knox really doesn't mean much.
Yes you will probably lose root. The only way to update now is to flash via odin as the over the air updates will not work (it will detect that the firmware has been altered and abort).
Doesn't mean that the kernel swap root method detailed here won't stop working, provided it will boot with the old kernel.
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