Is ROM Toolbox Pro working for you?
I have the paid versions of both Titanium Backup Pro and ROM Toolbox Pro. I stayed with titanium but experienced that it removes apps when those are moved to the SD card using the batch functionality. I also noticed in titanium that it restores all the apps and data on the internal storage instead of where an app was originally installed.
To avoid titanium's issues, I bought ROM Toolbox Pro, but I face similar issues with the app getting uninstalled when moved to the SD card, even when it is not moved in a batch. ROM Toolbox Pro gets stuck while trying to batch backup all apps, and it doesn't always do scheduled backups.
Both of the above apps are supposed to be good, so I wonder why there are several bugs in those. I don't have a great amount of confidence when I need to flash a new ROM, because it takes a couple of days to get everything as I like, because neither titanium nor ROM Toolbox Pro work smoothly.
Are others having these issues too?
4.1.2 JB LT4 Union ROM v7, LT3 Modem, PhilZ LT4 kernel, Carrier: AT&T (US)
Device: Samsung Galaxy Note GT-N7000 (international)
ROM: Criskelo 4.0.4 ICS ROM XXLRK v11.2
Kernel: speedmod k 3-13