This is why root keepers, toolkits and point and click miracle solutions for Nexus devices are absolutely awful. I don't blame people for using them as they're shiny attractive quick solutions but when they eventually end up causing your device to break (and they always do) the user has no clue how to get themselves out of a hole. I wish they weren't even allowed on XDA..
Your both going to have backup your loot and learn your devices the right way and I'd suggest jut flashing the factory 4.2.2 images and starting completely fresh at this point. I'd start with installing the Android SDK: http://developer.android.com/sdk/index.html
Install it, and set a system wide path to the /tools and /platform-tools folder of it from wherever you installed it.
How to set a system wide path: http://www.computerhope.com/issues/ch000549.htm
When you can run fastboot and adb from a command prompt from any location post back.
Your both going to have backup your loot and learn your devices the right way and I'd suggest jut flashing the factory 4.2.2 images and starting completely fresh at this point. I'd start with installing the Android SDK: http://developer.android.com/sdk/index.html
Install it, and set a system wide path to the /tools and /platform-tools folder of it from wherever you installed it.
How to set a system wide path: http://www.computerhope.com/issues/ch000549.htm
When you can run fastboot and adb from a command prompt from any location post back.
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