That's weird indeed.
So you're saying that the older version still works fine.
And applying the same settings with the same options with a newer version doesn't?
I guess you will have to supercharge with the older one save local.prop somewhere with the ADJ entries.
Then supercharge with a new version and keep that supcharged prop file and we can compare them.
Of course I can look at the scripts but it's better to see exactly what is written to your files without my assuming everything gets written the way I expect it to.
It's hard to compare the settings since the newer versions have more options, but I know it is using local prop. I will copy the current local.prop file and then try supercharging with the newest version and copy that local.prop as well. Should I pm you with those?