While we're in the same vein, I also have a problem similar to this...
Every time I try to run a GPS program (TomTom/GPSTest,etc.) and the GPS initializes, for some reason it first attempts to connect to the internet and fails. It does this about twice, fails, and I dismiss it every time.
The GPS then starts and does work without a problem (after I dismiss the failing to connect to the internet thing), so its really an annoyance more than anything.
There is obviously a lag in GPS connection with the initial disabling thing, but the lock is pretty quick after that...
This has happened to me w/ Dutty's Apr1, Apr16 & Apr 29th ROMS. It wasn't really a problem initially, but just happened one day for no apparent reason...
I do all the usual hard resets, etc., etc. Just wondering if anyone has any ideas out there, so they can save me a few extra finger movements...
EDIT: Scratch that.. It all seems to work now! Didn't do a thing.. As they say, if it ain't broke...