There are no rooted Apps, some Apps just need Root Access to fully work on the phone, they won´t be deinstalled, they just wouldn´t work anymore but u can toggle a Button with the "Visionary" App that it automatically will root ur phone again after a restart.
ah sorry that's what i meant. But good to hear they won't be gone! I can seriously live with this root situation. ok we wont have custom roms for now, but at least we can still use those apps that need root (titanium, tether, marketenabler etc.)