int2ext does not use init.d, but injects itself into /system/etc/recovery-install.sh (or something like that). So, if this script is the only one working, you are properly missing init.d support.
Take a look at this
Don't use RMount, it will be removed very soon as it is the cause of many problems.
Hmm.. ok then.
Since i use mounts2sd my device booting longer than before i use. Logcat shows
Code:
Application package com.daingo.news.indonesia already installed. Skipping duplicate.
/sd-ext/app/com.facebook.katana-1.apk changed; collecting certs
Application package com.facebook.katana already installed. Skipping duplicate.
/sd-ext/app/com.speedsoftware.sqleditor-2.apk changed; collecting certs
Application package com.speedsoftware.sqleditor already installed. Skipping duplicate.
/sd-ext/app/uk.co.nickfines.RealCalcPlus-1.apk changed; collecting certs
Application package uk.co.nickfines.RealCalcPlus already installed. Skipping duplicate.
/sd-ext/app/com.googlecode.rhinoforandroid-1.apk changed; collecting certs
Application package com.googlecode.rhinoforandroid already installed. Skipping duplicate.
/sd-ext/app/je.fit.pro-1.apk changed; collecting certs
...still many more.
Happened to all my installed apps.