So I have been working on this for a while trying to get things to cross compile, and i got this to compile it is the Source and the program runs on the nook. Next we will have to write our new init.rc to mount our own os. Someone will have to help me with some research, but I just thought you should know.
Here are the files:
To recomile with the NDK use the following command:
/home/<user>/Downloads/android-ndk-r7/toolchains/arm-linux-androideabi-4.4.3/prebuilt/linux-x86/bin/arm-linux-androideabi-gcc --sysroot=/home/<user>/Downloads/android-ndk-r7/platforms/android-14/arch-arm/ 2nd-init.c
(Thanks to Indirect)