It's not that simple. Here's what you need to do:
Charge the battery above 50%
Relock the bootloader using the following command:
Then boot the phone into bootloader and select Fastboot
using the volume rocker and pressing power. Then connect the USB cable. You should see FASTBOOT USB
Run the RUU from Windows and follow the wizard. You may have to extract and re-flash the stock recovery from the RUU for it to work, I don't remember.
Once the install is done you'll have unlock the bootloader again using the token you already have from the first time, reflash cwm recovery and re-root. All this will be 10x easier than the first time.