Default [Q] 4.2.2 Backup Question

I am rooted/s-off and I have just updated to 4.2.2. I am running CWM My SD Card is now symlinked to /data/media/0 but CWM still backs up to and restores from /data/media. This will make it difficult to transfer backups from the phone to my computer. Does anyone know of a solution for this?