As for containing viruses, modding a program doesn't inject anything. Often it's simply a packed .EXE file that the virus scanners detect as a virus. But in reality often it's a false positive and lazy scanning, as they detect it's been packed, and then just assume it's a virus/trojan.
Modern AVs can scan and even unpack compressed exe files without troubles, belive me. Since the other versions than that provided by adfree (clean) have been reported as suspicious by 6 AV engines (not just 1, though false positives are always possible) my advice is to not risk just for a nice looking GUI.
You can test the files by yourself with virus online check services like Jotti.org or Virustotal...
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