For all those people who did not use OTA RootKeeper to keep root before upgrading to JB, there is a way to root the device.
You need to be unlocked for this to work.
1) Boot into fastboot method. Flash custom CWM JB recovery from http://xdaforums.com/showpost.php?p=32251319&postcount=1
2) Flash CWM-SuperSU.zip from http://xdaforums.com/showpost.php?p=23427715&postcount=1
This should give you root back. You can test using Root Checker.
Fresh Install:
After Rooting:
You need to be unlocked for this to work.
1) Boot into fastboot method. Flash custom CWM JB recovery from http://xdaforums.com/showpost.php?p=32251319&postcount=1
2) Flash CWM-SuperSU.zip from http://xdaforums.com/showpost.php?p=23427715&postcount=1
This should give you root back. You can test using Root Checker.
Fresh Install:
After Rooting: