Finally seeing this thread after passing my 2 yrs+ Note1 to my dear daughter about 6 months ago!!!! My note was currently with SuperNexus 2.0 custom ROM and CWM recovery. Worth to try it and just want to check if the following procedure is correct:
1) Run compatible version of Odin, put your phone in to download mode (vol down/home/power button) and connect to PC via USB.
2) Tick re-partition box
3) Click PIT button and select the pit file of your desired app partition size.
In this case, I choose "n7000 (16gb)_4,6,8,10,12gb.zip".
4). Click "Pit" and "Start Button"
5). When Odin displaying "Pass!". Let the phone auto reboot to the Supernexus main screen. Not sure if the phone will be going back to the main screen. If stop at the android chap finishes his spinny wire ball belly animation, will just remove the battery and wait for few second.
6). Put back the battery and pressing "Volume up + Home button + Power button" to go into CWM recovery mode.
7). Now select clear cache to clear system cache, and dalvik cache under Advanced. Now go back to recovery menu and select Wipeout to wipe the data. (located in Advance menu)
8). Choose my "Jelly Bean 4.2 SuperNexus zip" file and the "Google Apps package zip file" and install it.
9). Reboot into System and verify the Internal SD Data App partition.
Please follow OP procedures below to avoid any mishaps.
IMPORTANT: Please backup all your photos, videos and other important stuff on your PC, in the cloud or somewhere else where it is safe, as all your stuff on your internal SD card will be deleted!
1) Run compatible version of Odin, put your phone in to download mode (vol down/home/power button) and connect to PC via USB
2) Tick re-partition box
3) Click PIT button and select the pit file of your desired app partition size.
4a) Click PDA and select your
stock official samsung jellybean rom - Edit- please remember if you use a rom that is not native to your region, it would be wise to flash the appropriate radio modem afterwards to ensure you get the signal strength you'd expect
4b)
OR Flash your personal choice of kernel in *.tar format and pit file, reboot to CWM ( power button/vol up/home button) and install new rom or restore nandroid and boot as normal and skip to number 9 in this guide
5) Flash and wait for reboot
6) Let the phone reboot and wait until the android chap finishes his spinny wire ball belly animation and then remove the battery and do a factory reset using the usual power/vol up/ home trick.
7) Let it boot so you can check that you are happy with the result. ( I didn't, but you might want to)
8) Now flash your chosen rooted kernel and either stick with stock rom or enter CWM and flash your own custom rom.
9) When your phone boots, you may get a notification to format usb storage, say yes if prompted! If it that fails, connect you phone to your PC and format the the internal sd card manually.