Interesting! Everything I've been encoding is 5.1, however with this particular video I increased the audio bitrate. I figured the default FFMPEG AAC setting of 64 Kbit might be a bit low for a movie, so increased it. (Previously I've just been encoding South Park episodes, which hardly require high audio bitrate).
My plan was to maintain 5.1 and convert all my mkv movies to mp4, as it not only reduces the file sizes a fair but, but also plays on Windows without any codec pack.
I guess I need to experiment with some different audio bitrates, or drop to stereo.
Thanks for the info!