It's true, layers on Rasta 5.1 won't apply on reboot (I swear I noticed this on grouper 5.1 Rasta a couple weeks back too). The Layers app has nothing to do with the problem. If ROM has the RRO commits, it should apply layers on reboot when vendor/overlay has the layers apk(s) placed inside. You can use the layers app to place them or manually extract a zip of apks to vendor/overlay. Both ways end up with apks in vendor/overlay waiting for a reboot during which they apply the theming.I am using the same atm and it works fine as it works form you too but not in rastapop!
I tried using root explorer to play with vendor/overlay file and folder permissions in Rasta (made them all match up with known good working layers directory and files on grouper 5.1 Chroma ROM as a model).
Still came up empty
I still think the issue could be permission or directory related, but I can't figure it out.
Sent from my LG-D800 using XDA
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