Instructions
What did you do? same problem
So the interesting thing is the process actually did what it said it was going to do which was unlock the bootloader, at least for me it did. The thing is Marshmallow doesnt like the state it will be in because of some inner permission issues, which cause it not boot up.
So first thing first is making sure your computer is talking to the device.
Get the tablet in the boot loader by pressing power button and holding the up volume key until u see the menu.
Next, make sure fast boot is selected.
Next run the command "fastboot device" and it should pull up some info about your device, i think it will be the serial number.
IF that is successful, now you can start flashing stuff.
You need to flash the system.img for your particular Nexus 9, in my case I have the 32g lte version make sure you find the one for your variant.
Next will be flashing a recovery which needs to be the latest TWRP for nexus.
https://twrp.me/devices/htcnexus9.html
Next you need to install ElementalX kernel from TWRP.
https://www.androidfilehost.com/?fid=24269982086992358 THis kernel fixes the permission issue that initially cause the tablet to not boot.
Lastly if you want to root install the lastest SuperSu Beta.
http://forum.xda-developers.com/attachment.php?attachmentid=3523851&d=1446166283.
Just post if you have any questions. Not sure what level you at when it comes to doing this stuff but we will help the best way we can.