Jell Bean 4.3
SystemUI.apk
To make the notification shade transparent you need to change the notification background colour setting in drawables.xml to #00000000, similarly for the notification title
The annoying blue line above the carrier label is controlled by the close_handler_divider value
The toggle text is found in values>drawables.xml
Status bar date, clock etc is controlled by layout>status_bar.xml and values>drawables.xml
You will encounter issues recompiling this This
Folder contains the edited files to allow you to compile successfully. Place the files in the appropriate folders. It should be self-explanatory.
Framework-res.apk
Main Text is controlled by tw_primary/secondary_text_holo_dark xmls
Popup text is tw_popup_primary-text_holo_dark.xml
values>styles.xml controls the colour of notifications text, date etc.
A lot of files which used to be in drawable-xhdpi are now in drawable-sw359dp-xhdpi including the dialogs, menu backgrounds, Wi-Fi etc. toggles
TWframework-res.apk
I've had issues flashing recompiled resources.arsc which used to work. Now I get a SystemUI FC. The good news is that you can now change the colour of text in the contacts app which used to be found here in styles.xml in SecContacts.apk
SecContacts
You'll have compiling errors. The files needed to compile correctly are in the same file as the SystemUI corrections.