I've always wondering why no one have came out with a way to enable Quick Charge 2.0 despite our phone is on the supported list. I Googled it, and found out that the Sony Xperia Z2 international version have the same situation as us. Sony didn't enable it on the International Version, but xda devs found some way to enable it. I'm no pro on these, as I'm not a dev, so I will leave a link here so that other devs will have a look and at least see some hope on QC2.0 in SD version of Redmi Note 3.
http://forum.xda-developers.com/xperia-z2/development/sony-secret-revealed-qc-2-0-t3163490
http://forum.xda-developers.com/xperia-z2/development/sony-secret-revealed-qc-2-0-t3163490